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夜雨聆风 > > 办公文件 > PrimiGenius的聚类热图插件很好用~

PrimiGenius的聚类热图插件很好用~

当前时间： 1970-01-01 08:00:00 分类：办公文件 评论(0)
PrimiGenius的聚类热图插件很好用~

热图是我们非常常用的科研数据呈现方式之一，用来将数据转化为色彩，直观的展现数据之间的数值差异。在生物学中常用来展示基因表达之间的差异，我们前面也介绍了使用graphpad来绘制热图Graphpad绘制热图，没法绘制聚类热图，有了PrimiGenius这个全能框架，我就基于ComplexHeatmap包整了一个插件，参数也很多，可以基本满足我们的日常需求。

关于热图的一些聚类参数，我之前在《Hiplot一款免费开源的科研数据可视化平台介绍-以热图绘制为例》里面有详细介绍，需要的可以参考一下，我们也使用了这个开源网站的示例数据【在此致谢该开源团队，致谢其开源精神】。

关于这个bar值参数主要是设置显示最大最小值范围以及中间分几段。

关于显示效果，这里可以设置色块的类型，大小，是否显示数值在色块上，数值颜色，等

除了输出一个svg矢量图之外，我们还额外输出了一个标准化后用于绘图的数据表，作为记录。

视频教程【比较详细】：

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好啦，今天的分享到此结束，水平有限，才疏学浅，如有问题，请多指教，青山不改，绿水长流，山高路远，顶峰相见。

推荐阅读：

使用PrimiGenius的Autodock vina插件进行批量分子对接与PLIP插件结果可视化

PrimiGenius的Trimmomatic和Trim Galore修剪插件

Fasta序列操作工具箱被打包成PrimiGenius插件

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  1. CONNECT:[ UseTime:0.000673s ] mysql:host=127.0.0.1;port=3306;dbname=wenku;charset=utf8mb4
  2. SHOW FULL COLUMNS FROM `fenlei` [ RunTime:0.000699s ]
  3. SELECT * FROM `fenlei` WHERE `fid` = 0 [ RunTime:0.000307s ]
  4. SELECT * FROM `fenlei` WHERE `fid` = 63 [ RunTime:0.000289s ]
  5. SHOW FULL COLUMNS FROM `set` [ RunTime:0.000490s ]
  6. SELECT * FROM `set` [ RunTime:0.000198s ]
  7. SHOW FULL COLUMNS FROM `article` [ RunTime:0.000514s ]
  8. SELECT * FROM `article` WHERE `id` = 690293 LIMIT 1 [ RunTime:0.000380s ]
  9. UPDATE `article` SET `lasttime` = 1780215931 WHERE `id` = 690293 [ RunTime:0.001365s ]
  10. SELECT * FROM `fenlei` WHERE `id` = 64 LIMIT 1 [ RunTime:0.000234s ]
  11. SELECT * FROM `article` WHERE `id` < 690293 ORDER BY `id` DESC LIMIT 1 [ RunTime:0.000435s ]
  12. SELECT * FROM `article` WHERE `id` > 690293 ORDER BY `id` ASC LIMIT 1 [ RunTime:0.000466s ]
  13. SELECT * FROM `article` WHERE `id` < 690293 ORDER BY `id` DESC LIMIT 10 [ RunTime:0.001138s ]
  14. SELECT * FROM `article` WHERE `id` < 690293 ORDER BY `id` DESC LIMIT 10,10 [ RunTime:0.002807s ]
  15. SELECT * FROM `article` WHERE `id` < 690293 ORDER BY `id` DESC LIMIT 20,10 [ RunTime:0.000843s ]
0.091706s